Scarab {ontoFAST}

A modified Hymenoptera Anatomy Ontology (HAO) to accommodate anatomy of dung beetles

Description

Anatomy ontology of Hymenoptera + Dung beetles. This ontology was imported into R using get_OBO() function from ontologyIndex packages (see the examples). The added terms for dung beetle anatomy have prefix "SCR".

Usage

Scarab

Format

List containing various ontological relationships and terms.

References

Yoder MJ, Mikó I, Seltmann KC, Bertone MA, Deans AR. 2010. A Gross Anatomy Ontology for Hymenoptera. PLoS ONE 5 (12): e15991. (Read)

Hymenoptera Anatomy Ontology Portal

Examples

data(Scarab)
#you can also parse the original .obo file
get_OBO(system.file("data_onto", "HAO4scarabs.obo", package = "ontoFAST"),
extract_tags="everything", propagate_relationships = c("BFO:0000050", "is_a"))