chars_per_term {ontoFAST} | R Documentation |
Get number of chracters per each ontology term
Description
Returns matrix summarizing number of characters per each ontology terms in descending order
Usage
chars_per_term(ontology, annotations = "auto")
Arguments
ontology |
ontology_index object with character annatotions included (ontology$annot_characters). |
annotations |
which annotations to use: "auto" means automatic annotations, "manual" means manual ones. Alternatively, any othe list element containing annotations can be specified. |
Value
The matrix of ontology terms IDs, their names and character number.
Examples
data(HAO)
ontology<-HAO
ontology$terms_selected_id<-list(`CHAR:1`=c("HAO:0000653"), `CHAR:2`=c("HAO:0000653"))
chars_per_term(ontology, annotations="manual")
[Package ontoFAST version 1.0.0 Index]