armRatioCI {idiogramFISH}

FUNCTIONS armRatioCI and swapChrRegionDfSizeAndMarks.

Description

armRatioCI: reads a data.frame and produces AR (arm ratio), CI (centromeric index) , Guerra and Levan classifications.

swapChrRegionDfSizeAndMarks: reads data.frames to swap arms

Usage

armRatioCI(dfChrSize, rnumeric = FALSE)

swapChrRegionDfSizeAndMarks(dfChrSize, dfMarkPos, chrNamesToSwap)

Arguments

dfChrSize

name of data.frame with columns: shortArmSize, longArmSize

rnumeric

boolean, returns only numeric AR, CI

dfMarkPos

name of data.frame of marks

chrNamesToSwap

name of chr. names to swap arms

Value

data.frame (armRatioCI)

list of data.frames (swapChrRegionDfSizeAndMarks)

References

LEVAN A, FREDGA K, SANDBERG AA (1964) NOMENCLATURE FOR CENTROMERIC POSITION ON CHROMOSOMES. Hereditas 52:201-220.

Guerra. 1986. Reviewing the chromosome nomenclature of Levan et al. Braz. Jour. Gen. Vol IX, 4, 741-743

See Also

chrbasicdatamono

Examples

armRatioCI(dfOfChrSize)
armRatioCI(bigdfOfChrSize)

swapChrRegionDfSizeAndMarks(dfOfChrSize, dfOfMarks, "1")