perMark {idiogramFISH}

FUNCTION perMark

Description

calculates fraction (%) of chromosome for each mark

Usage

perMark(dfMarkPos, listOfdfChromSize, result = "list", bToRemove = "")

Arguments

dfMarkPos

data.frame, of marks' position

listOfdfChromSize

list of data.frames or data.frame of chr. sizes.

result

character, type of return, "data.frame" or "list"

bToRemove

character vector, bands to ignore

Value

list

Examples

load(system.file("shinyApps", "iBoard/www/rda/monoholoCS.rda", package = "idiogramFISH"))
load(system.file("shinyApps", "iBoard/www/rda/monoholoMarks.rda", package = "idiogramFISH"))
monoholoMarks2 <- fillMarkInfo(monoholoMarks, monoholoCS)
perMark(monoholoMarks2, monoholoCS, result = "data.frame")