| chrbasicdatamono {idiogramFISH} | R Documentation |
Chr. basic data Monocen.
Description
dfOfChrSize: Example data for monocentrics
bigdfOfChrSize: Example data for monocentrics for several species, OTU
humChr: Data for human karyotype, measured from Adler (1994)
allChrSizeSample: Example data for monocentrics for several species, OTU
parentalAndHybChrSize: Example data for monocentrics for GISH
traspadf: Example data for Tradescantia (Rhoeo) spathacea (Golczyk et al. 2005)
Usage
dfOfChrSize
bigdfOfChrSize
humChr
allChrSizeSample
parentalAndHybChrSize
traspadf
Format
data.frame with columns:
- OTU
OTU, species, optional if only one OTU (species)
- chrName
name of chromosome
- shortArmSize
size of short arm, micrometers
- longArmSize
size of long arm, micrometers
- group
chr group, optional
- chrNameUp
optional name over kar.
- Mbp
optional name to show size in Mbp, use only when shortArmSize is not in Mbp
An object of class data.frame with 50 rows and 4 columns.
An object of class data.frame with 24 rows and 4 columns.
An object of class data.frame with 75 rows and 4 columns.
An object of class data.frame with 13 rows and 4 columns.
An object of class data.frame with 12 rows and 4 columns.
Source
http://www.pathology.washington.edu/research/cytopages/idiograms/human/
References
Adler 1994. Idiogram Album. http://www.pathology.washington.edu/research/cytopages/idiograms/human/
Golczyk H, Hasterok R, Joachimiak AJ (2005) FISH-aimed karyotyping and characterization of Renner complexes in permanent heterozygote Rhoeo spathacea. Genome 48:145-153.