ecospat.testTree {ecospat}

Test Tree For The Ecospat package

Description

The tree object is a phylogenetic tree of class 'phylo' (see read.tree) that contains data of 50 angiosperm species from the Western Swiss Alps.

Format

ecospat.testTree is a tree contains the following species:

[1] "Rumex_acetosa" [2] "Polygonum_bistorta" [3] "Polygonum_viviparum" [4] "Rumex_crispus" [5] "Cerastium_latifolium" [6] "Silene_acaulis" [7] "Gypsophila_repens" [8] "Vaccinium_gaultherioides" [9] "Soldanella_alpina" [10] "Cruciata_laevipes" [11] "Galium_album" [12] "Galium_anisophyllon" [13] "Galium_megalospermum" [14] "Gentiana_verna" [15] "Gentiana_bavarica" [16] "Gentiana_purpurea" [17] "Gentiana_lutea" [18] "Bartsia_alpina" [19] "Rhinanthus_alectorolophus" [20] "Prunella_grandiflora" [21] "Acinos_alpinus" [22] "Plantago_alpina" [23] "Plantago_lanceolata" [24] "Veronica_officinalis" [25] "Veronica_aphylla" [26] "Veronica_alpina" [27] "Veronica_chamaedrys" [28] "Veronica_persica" [29] "Globularia_cordifolia" [30] "Globularia_nudicaulis" [31] "Myosotis_alpestris" [32] "Myosotis_arvensis" [33] "Aposeris_foetida" [34] "Centaurea_montana" [35] "Hieracium_lactucella" [36] "Leontodon_helveticus" [37] "Leontodon_autumnalis" [38] "Hypochaeris_radicata" [39] "Achillea_atrata" [40] "Achillea_millefolium" [41] "Homogyne_alpina" [42] "Senecio_doronicum" [43] "Adenostyles_glabra" [44] "Arnica_montana" [45] "Aster_bellidiastrum" [46] "Bellis_perennis" [47] "Doronicum_grandiflorum" [48] "Phyteuma_orbiculare" [49] "Phyteuma_spicatum" [50] "Campanula_rotundifolia"

Author(s)

Charlotte Ndiribe [e-mail], Nicolas Salamin [e-mail] and Antoine Guisan [e-mail]

References

Ndiribe, C., L. Pellissier, S. Antonelli, A. Dubuis, J. Pottier, P. Vittoz, A. Guisan and N. Salamin. 2013. Phylogenetic plant community structure along elevation is lineage specific. Ecology and Evolution, 3, 4925-4939.

Examples

if(require("ape",quietly=TRUE)){
  fpath <- system.file("extdata", "ecospat.testTree.tre", package="ecospat")
  tree <- ape::read.tree(fpath)
  plot(tree)
}