make.pgls {diversitree} | R Documentation |
Generate the likelihood function that underlies PGLS
(Phylogenetic Generalised Least Squares). This is a bit of a misnomer
here, as you may not be interested in least squares (e.g., if using
this with mcmc
for Bayesian inference).
make.pgls(tree, formula, data, control=list())
tree |
A bifurcating phylogenetic tree, in |
formula |
A model formula; see |
data |
A data frame containing the variables in the model. If
not found in |
control |
A list of control parameters. Currently the only
option is the key “method” which can be |
Richard G. FitzJohn
Freckleton R.P. 2012. Fast likelihood calculations for comparative analyses. Methods in Ecology and Evolution 3: 940-947.