seq_stat_gc {bioseq}

R Documentation

Compute G+C content

Description

Compute G+C content

Usage

seq_stat_gc(x)

Arguments

x	a DNA or RNA

Details

Ambiguous characters (other than S and W) are ignored.

Value

A numeric vector of G+C proportions.

See Also

Other op-misc: seq_disambiguate_IUPAC(), seq_nchar(), seq_nseq(), seq_spellout(), seq_stat_prop()

Examples

x <- dna(c("ATGCAGA", "GGR-----","TTGCCTAGKTGAACC"))

seq_stat_gc(x)

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