seaview {bioseq} | R Documentation |
SeaView: DNA sequences and phylogenetic tree viewer
Description
This function opens SeaView (Gouy, Guindon & Gascuel, 2010) to visualize biological sequences and phylogenetic trees. The software must be installed on the computer.
Usage
seaview(
x,
seaview_exec = getOption("bioseq.seaview.exec", default = "seawiew")
)
Arguments
x |
a DNA, RNA or AA vector.
Alternatively a |
seaview_exec |
a character string giving the path of the program. |
Details
By default, the function assumes that the executable is installed
in a directory located on the PATH. Alternatively the user can provide
an absolute path to the executable (i.e. the location where the software
was installed/uncompressed). This can be stored in the global
options settings using
options(bioseq.seaview.exec = "my_path_to_seaview")
.
References
Gouy M., Guindon S. & Gascuel O. (2010) SeaView version 4 : a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27(2):221-224.
See Also
Other GUI wrappers:
aliview()