seq_stat_prop {bioseq}

R Documentation

Compute proportions for characters

Description

Compute proportions for characters

Usage

seq_stat_prop(x, gaps = FALSE)

Arguments

x	a DNA, RNA or AA vector.
gaps	if FALSE gaps are ignored.

Value

A list of vectors indicating the proportion of characters in each sequence.

See Also

Other op-misc: seq_disambiguate_IUPAC(), seq_nchar(), seq_nseq(), seq_spellout(), seq_stat_gc()

Examples

x <- dna(c("ATGCAGA", "GGR-----","TTGCCTAGKTGAACC"))
seq_stat_prop(x)
seq_stat_prop(x, gaps = TRUE)

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