seq_remove_position {bioseq}

R Documentation

Remove a region between two positions in sequences.

Description

Remove a region between two positions in sequences.

Usage

seq_remove_position(x, position_in, position_out)

Arguments

x	a DNA, RNA or AA vector.
position_in	an integer giving the position where to start to remove.
position_out	an integer giving the position where to stop to remove.

Value

A vector of same class as x.

See Also

str_remove from stringr for the underlying implementation.

Other string operations: seq-replace, seq_combine(), seq_count_pattern(), seq_crop_pattern(), seq_crop_position(), seq_detect_pattern(), seq_extract_pattern(), seq_extract_position(), seq_remove_pattern(), seq_replace_position(), seq_split_kmer(), seq_split_pattern()

Examples

x <- dna("ACGTTAGTGTAGCCGT", "CTCGAAATGA")
seq_remove_position(x, 2, 6)
seq_remove_position(x, 1:2, 3:4)

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