test_metab {MMINP}

(Data) Normalized metabolite abundances for MMINP prediction

Description

This datasets were built from NLIBD dataset (Franzosa et al., 2019) by converting original HMDB IDs into KEGG compound IDs and removing unassigned and repeated features.

Format

A data frame of metabolite relative abundances (i.e. proportion), with 65 subjects in rows and 130 KEGG compound IDs in columns.

References

Franzosa EA et al. (2019). Gut microbiome structure and metabolic activity in inflammatory bowel disease. Nature Microbiology 4(2):293-305.

Examples

data(test_metab)