train_metab {MMINP}

(Data) Normalized metabolite abundances for MMINP training

Description

This datasets were built from PRISM dataset (Franzosa et al., 2019) by converting original HMDB IDs into KEGG compound IDs and removing unassigned and repeated features.

Format

A data frame of metabolite relative abundances (i.e. proportion), with 155 subjects in rows and 135 KEGG compound IDs in columns.

References

Franzosa EA et al. (2019). Gut microbiome structure and metabolic activity in inflammatory bowel disease. Nature Microbiology 4(2):293-305.

Examples

data(train_metab)