train_metag {MMINP}

(Data) Normalized gene family abundances for MMINP training

Description

This datasets were built from PRISM dataset (Franzosa et al., 2019) by converting original UniRef90 IDs into KEGG Orthology (KO) IDs and removing unassigned and repeated features.

Format

A data frame of gene family relative abundances (i.e. proportion), with 155 subjects in rows and 733 KEGG Orthology (KO) IDs in columns.

References

Franzosa EA et al. (2019). Gut microbiome structure and metabolic activity in inflammatory bowel disease. Nature Microbiology 4(2):293-305.

Examples

data(train_metag)