test_metag {MMINP}

(Data) Normalized gene family abundances for MMINP prediction

Description

This datasets were built from NLIBD dataset (Franzosa et al., 2019) by converting original UniRef90 IDs into KEGG Orthology (KO) IDs and removing unassigned and repeated features.

Format

A data frame of gene family relative abundances (i.e. proportion), with 65 subjects in rows and 629 KEGG Orthology (KO) IDs in columns.

References

Franzosa EA et al. (2019). Gut microbiome structure and metabolic activity in inflammatory bowel disease. Nature Microbiology 4(2):293-305.

Examples

data(test_metag)