| plotSummary.ResScanOutputUniFunct {HDSpatialScan} | R Documentation |
Plots the mean or median curves in the clusters detected by a univariate functional scan procedure (PFSS, NPFSS, DFFSS or URBFSS)
Description
This function plots the mean or median curves in the clusters detected by a univariate functional scan procedure (PFSS, NPFSS, DFFSS or URBFSS).
Usage
## S3 method for class 'ResScanOutputUniFunct'
plotSummary(x, type = "mean", colors = "red", only.MLC = FALSE, ...)
Arguments
x |
ResScanOutputUniFunct. Output of a univariate functional scan function (PFSS, NPFSS, DFFSS or URBFSS). |
type |
character. "mean" or "median". If "mean": the mean curves in the clusters are plotted in solid lines, outside the cluster in dots, the global mean curve is in black. If "median": the median curves in the clusters are plotted in solid lines, outside the cluster in dots, the global median curve is in black. |
colors |
character. The colors to plot the clusters' summary curves. If length(colors)==1 then all the clusters will be plotted in this color. Else there must be the same number of elements in colors than the number of clusters |
only.MLC |
logical. Should we plot only the MLC or all the significant clusters? |
... |
Further arguments to be passed to or from methods. |
Value
No value returned, plots the curves.
Examples
library(sp)
data("map_sites")
data("funi_data")
coords <- coordinates(map_sites)
res_npfss <- SpatialScan(method = "NPFSS", data = funi_data, sites_coord = coords,
system = "WGS84", mini = 1, maxi = nrow(coords)/2)$NPFSS
plotSummary(x = res_npfss, type = "median")