ggnet2 {ClusTCR2}

Copied code from ggnet's ggnet2 function

Description

Copied code from ggnet's ggnet2 function

Usage

ggnet2(
  net,
  mode = "fruchtermanreingold",
  layout.par = NULL,
  layout.exp = 0,
  alpha = 1,
  color = "grey75",
  shape = 19,
  size = 9,
  max_size = 9,
  na.rm = NA,
  palette = NULL,
  alpha.palette = NULL,
  alpha.legend = NA,
  color.palette = palette,
  color.legend = NA,
  shape.palette = NULL,
  shape.legend = NA,
  size.palette = NULL,
  size.legend = NA,
  size.zero = FALSE,
  size.cut = FALSE,
  size.min = NA,
  size.max = NA,
  label = FALSE,
  label.alpha = 1,
  label.color = "black",
  label.size = max_size/2,
  label.trim = FALSE,
  node.alpha = alpha,
  node.color = color,
  node.label = label,
  node.shape = shape,
  node.size = size,
  edge.alpha = 1,
  edge.color = "grey50",
  edge.lty = "solid",
  edge.size = 0.25,
  edge.label = NULL,
  edge.label.alpha = 1,
  edge.label.color = label.color,
  edge.label.fill = "white",
  edge.label.size = max_size/2,
  arrow.size = 0,
  arrow.gap = 0,
  arrow.type = "closed",
  legend.size = 9,
  legend.position = "right",
  ...
)

Arguments

net

net plot from step 2.

mode

= "fruchtermanreingold"

layout.par

= NULL,

layout.exp

= 0

alpha

= 1

color

= "grey75"

shape

= 19

size

= 9

max_size

= 9

na.rm

= NA

palette

= NULL

alpha.palette

= NULL

alpha.legend

= NA

color.palette

= palette

color.legend

= NA

shape.palette

= NULL

shape.legend

= NA

size.palette

= NULL

size.legend

= NA

size.zero

= FALSE

size.cut

= FALSE

size.min

= NA

size.max

= NA

label

= FALSE

label.alpha

= 1

label.color

= "black"

label.size

= max_size/2

label.trim

= FALSE

node.alpha

see alpha

node.color

see color

node.label

see label

node.shape

see shape

node.size

see size

edge.alpha

= 1

edge.color

the color of the edges, as a color value, a vector of color values, or as an edge attribute containing color values. Defaults to "grey50".

edge.lty

= "solid"

edge.size

= 0.25

edge.label

= NULL

edge.label.alpha

= 1

edge.label.color

= label.color

edge.label.fill

= "white"

edge.label.size

= max_size/2

arrow.size

= 0

arrow.gap

= 0

arrow.type

= "closed"

legend.size

= 9

legend.position

= "right"

...

Other functions in ggplot2

Value

A ggplot object displaying the network plot.