motif_plot_large {ClusTCR2}

Code for plotting the Motif based on a specific CDR3 length and V gene (see netplot_ClusTCR2 for details).

Description

Code for plotting the Motif based on a specific CDR3 length and V gene (see netplot_ClusTCR2 for details).

Usage

motif_plot_large(
  ClusTCRFile_large,
  Clust_column_name = "Clust_size_order",
  Clust_selected = NULL
)

Arguments

ClusTCRFile_large

Matrix file produced from mcl_cluster_large.

Clust_column_name

Name of clustering column from mcl_cluster file e.g. cluster.

Clust_selected

Select which cluster to display. Only one at a time.

Value

A ggplot object representing the motif.