ClusTCR_Large {ClusTCR2}

Creates ClusTCR matrix This function identifies similar CDR3 amino acid sequences based on the same length and V_gene

Description

Creates ClusTCR matrix This function identifies similar CDR3 amino acid sequences based on the same length and V_gene

Usage

ClusTCR_Large(my_file, allele = NULL, v_gene = "v_call")

Arguments

my_file

uploaded file with junction_aa (CD3 sequences), variable gene.

allele

The allele, if present as *00 will be removed if the user requires it.

v_gene

Variable gene column name

Value

X by Y matrix of structurally related CDR3 sequences.