add_animation {volcano3D}

Add mode bar button to rotate the plot

Description

Add mode bar button to rotate the plot

Usage

add_animation(
  p,
  rotate_icon_path = NULL,
  stop_icon_path = NULL,
  rotate_colour = "#c7c7c7",
  stop_colour = "#ff6347",
  scale = "scale(0.4) translate(-4, -4)",
  speed = 320,
  shiny_event_names = c()
)

Arguments

p

The volcano3D plot

rotate_icon_path

The svg icon path for rotation. If NULL a play button is used

stop_icon_path

The svg icon path for stop button. If NULL a pause button is used

rotate_colour

The colour for the rotate button (default="#c7c7c7")

stop_colour

The colour for the stop button (default='#ff6347', a.k.a 'tomato')

scale

Scaling for rotation button

speed

The rotation speed

shiny_event_names

If using shiny, pass in any shiny event names which should stop rotation when triggered (e.g. shiny_event_names = c('replot'))

Value

Returns a rotating cylindrical 3D plotly plot featuring variables on a tri-axis radial graph with the -log10(multi-group test p-value) on the z-axis

References

Lewis, Myles J., et al. (2019). Molecular portraits of early rheumatoid arthritis identify clinical and treatment response phenotypes. Cell reports, 28:9

See Also

volcano3D

Examples

data(example_data)
syn_polar <- polar_coords(outcome = syn_example_meta$Pathotype,
                          data = t(syn_example_rld))

p <- volcano3D(syn_polar, 
    label_rows = c("COBL", "TREX2"))
add_animation(p)