plotEPG2 {strvalidator} | R Documentation |
plotEPG2
Description
EPG data visualizer (interactive)
Usage
plotEPG2(
mixData,
kit,
refData = NULL,
AT = NULL,
ST = NULL,
dyeYmax = TRUE,
plotRepsOnly = TRUE,
options = NULL
)
Arguments
mixData |
List of mixData[[ss]][[loc]] =list(adata,hdata), with samplenames ss, loci names loc, allele vector adata (can be strings or numeric), intensity vector hdata (must be numeric) |
kit |
Short name of kit: See supported kits with getKit() |
refData |
List of refData[[rr]][[loc]] or refData[[loc]][[rr]] to label references (flexible). Visualizer will show dropout alleles. |
AT |
A detection threshold can be shown in a dashed line in the plot (constant). Possibly a vector with locus column names |
ST |
A stochastic threshold can be shown in a dashed line in the plot (constant). Possibly a vector with locus column names |
dyeYmax |
Whether Y-axis should be same for all markers (FALSE) or not (TRUE this is default) |
plotRepsOnly |
Whether only replicate-plot is shown in case of multiple samples (TRUE is default) |
options |
A list of possible plot configurations. See comments below |
Details
Plots peak height with corresponding allele for sample(s) for a given kit.
Value
sub A plotly widget
Author(s)
Oyvind Bleka