read_allele_freqs {simDNAmixtures}

Read allele frequencies in FSIgen format (.csv)

Description

Read allele frequencies in FSIgen format (.csv)

Usage

read_allele_freqs(filename, remove_zeroes = TRUE, normalise = TRUE)

Arguments

filename

Path to csv file.

remove_zeroes

Logical. Should frequencies of 0 be removed from the return value? Default is TRUE.

normalise

Logical. Should frequencies be normalised to sum to 1? Default is TRUE.

Details

Reads allele frequencies from a .csv file. The file should be in FSIgen format, i.e. comma separated with the first column specifying the allele labels and one column per locus. The last row should be the number of observations. No error checking is done since the file format is only loosely defined, e.g. we do not restrict the first column name or the last row name.

Value

Named list with frequencies by locus. The frequencies at a locus are returned as a named numeric vector with names corresponding to alleles.

Examples

# below we read an allele freqs file that comes with the package
filename <- system.file("extdata","FBI_extended_Cauc.csv",package = "simDNAmixtures")
freqs <- read_allele_freqs(filename)
freqs # the output is a list with an attribute named \code{N} giving the sample size.