color_patterns_pheno {qtl2ggplot}

Set up col, pattern, shape and group for plotting.

Description

Set up col, pattern, shape and group for plotting.

Usage

color_patterns_pheno(
  scan1ggdata,
  lod,
  pattern,
  col,
  shape,
  patterns,
  facet = NULL
)

Arguments

scan1ggdata

data frame to be used for plotting

lod

matrix of LOD scores by position and pheno

pattern

allele pattern of form AB:CDEFGH

col

Color for color column in scan1ggdata

shape

Shape for shape column in scan1ggdata

patterns

Connect SDP patterns: one of c("none","all","hilit")

facet

use facet_wrap if not NULL

Value

data frame scan1ggdata with additional objects.