extractCTriad {protr} | R Documentation |
Conjoint Triad Descriptor
Description
This function calculates the Conjoint Triad descriptor (dim: 343).
Usage
extractCTriad(x)
Arguments
x |
A character vector, as the input protein sequence. |
Value
A length 343 named vector
Note
For this descriptor type, users need to intelligently evaluate the underlying details of the descriptors provided, instead of using this function with their data blindly. It would be wise to use some negative and positive control comparisons where relevant to help guide interpretation of the results.
Author(s)
Nan Xiao <https://nanx.me>
References
J.W. Shen, J. Zhang, X.M. Luo, W.L. Zhu, K.Q. Yu, K.X. Chen, Y.X. Li, H.L. Jiang. Predicting Protein-protein Interactions Based Only on Sequences Information. Proceedings of the National Academy of Sciences. 007, 104, 4337–4341.
Examples
x <- readFASTA(system.file("protseq/P00750.fasta", package = "protr"))[[1]]
extractCTriad(x)
[Package protr version 1.7-2 Index]