readPDB {protr} | R Documentation |
Read Protein Sequences in PDB Format
Description
This function reads protein sequences in PDB (Protein Data Bank) format, and return the amino acid sequences represented by single-letter code.
Usage
readPDB(file = system.file("protseq/4HHB.pdb", package = "protr"))
Arguments
file |
Path to the file containing the protein sequences in PDB format.
If it does not contain an absolute or
relative path, the file name is relative to the current
working directory, |
Value
Character vector of the protein sequence.
Author(s)
Nan Xiao <https://nanx.me>
References
Protein Data Bank Contents Guide: Atomic Coordinate Entry Format Description, Version 3.30. Accessed 2013-06-26. https://files.wwpdb.org/pub/pdb/doc/format_descriptions/Format_v33_Letter.pdf
See Also
See readFASTA
for reading
protein sequences in FASTA format.
Examples
Seq4HHB <- readPDB(system.file("protseq/4HHB.pdb", package = "protr"))