FvCB {photosynthesis} | R Documentation |
Farquhar-von Caemmerer-Berry (FvCB) C3 photosynthesis model
Description
Farquhar-von Caemmerer-Berry (FvCB) C3 photosynthesis model
Rubisco-limited assimilation rate
RuBP regeneration-limited assimilation rate
TPU-limited assimilation rate
Usage
FvCB(C_chl, pars, unitless = FALSE)
W_carbox(C_chl, pars, unitless = FALSE)
W_regen(C_chl, pars, unitless = FALSE)
W_tpu(C_chl, pars, unitless = FALSE)
Arguments
C_chl |
Chloroplastic CO2 concentration in Pa of class |
pars |
Concatenated parameters ( |
unitless |
Logical. Should |
Details
Equations following Buckley and Diaz-Espejo (2015):
Rubisco-limited assimilation rate:
where:
RuBP regeneration-limited assimilation rate:
where is a function of PPFD, obtained by solving the equation:
TPU-limited assimilation rate:
Symbol | R | Description | Units | Default |
| C_chl | chloroplastic CO2 concentration | Pa | input |
| gamma_star | chloroplastic CO2 compensation point (T_leaf) | Pa | calculated |
| J_max | potential electron transport (T_leaf) | mol CO2 / (m s) | calculated |
| K_C | Michaelis constant for carboxylation (T_leaf) | mol / mol | calculated |
| K_O | Michaelis constant for oxygenation (T_leaf) | mol / mol | calculated |
| O | atmospheric O2 concentration | kPa | 21.27565 |
| phi_J | initial slope of the response of J to PPFD | none | 0.331 |
PPFD | PPFD | photosynthetic photon flux density | umol quanta / (m^2 s) | 1500 |
| R_d | nonphotorespiratory CO2 release (T_leaf) | mol CO2 / (m s) | calculated |
| theta_J | curvature factor for light-response curve | none | 0.825 |
| V_cmax | maximum rate of carboxylation (T_leaf) | mol CO2 / (m s) | calculated |
| V_tpu | rate of triose phosphate utilization (T_leaf) | mol CO2 / (m s) | calculated |
Value
A list of four values with units umol CO2 / (m^2 s) of class units
:
-
W_carbox
: Rubisco-limited assimilation rate
-
W_regen
: RuBP regeneration-limited assimilation rate
-
W_tpu
: TPU-limited assimilation rate
-
A
: minimum of W_carbox, W_regen, and W_tpu
References
Buckley TN and Diaz-Espejo A. 2015. Partitioning changes in photosynthetic rate into contributions from different variables. Plant, Cell & Environment 38: 1200-11.
Farquhar GD, Caemmerer S, Berry JA. 1980. A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species. Planta 149: 78–90.
Examples
bake_par = make_bakepar()
constants = make_constants(use_tealeaves = FALSE)
enviro_par = make_enviropar(use_tealeaves = FALSE)
leaf_par = make_leafpar(use_tealeaves = FALSE)
leaf_par = bake(leaf_par, enviro_par, bake_par, constants)
pars = c(leaf_par, enviro_par, constants)
C_chl = set_units(246.0161, umol / mol)
FvCB(C_chl, pars)