get_example {flowTraceR}

Create example data

Description

Example data for ProteomeDiscoverer, Spectronaut, DIA-NN and MaxQuant.

Usage

get_example(
  example = c("MaxQuant", "DIA-NN", "Spectronaut", "PD", "RetentionTime")
)

Arguments

example

Choose between "ProteomeDiscoverer", "Spectronaut", "DIA-NN" and "MaxQuant" or for an example for downstream analysis "RetentionTime". Default is MaxQuant.

Details

Data for each software for testing functions of flowTraceR. Additional example data for Spectronaut and DIA-NN for analyzing retention time distribution on precursor level.

Value

This function returns example data as dataframe for the respective chosen example. For "MaxQuant" a list with evidence/proteingroup dataframe. For "RetentionTime" a list with Spectronaut/DIA-NN data including retention time information.

Author(s)

Oliver Kardell

Examples

# Spectronaut example data
Spectronaut_data <- get_example(example = "Spectronaut")