example_cohort_scna_table {driveR}

Example Cohort-level Somatic Copy Number Alteration Table

Description

A data set containing the somatic copy number alteration data for 10 randomly selected samples from TCGA's LAML (Acute Myeloid Leukemia) cohort

Usage

example_cohort_scna_table

Format

A data frame with 126147 rows and 5 variables:

chr

chromosome the segment is located in

start

start position of the segment

end

end position of the segment

log2ratio

log₂

ratio of the segment

tumor_id

ID for the tumor containing the SCNA segment

Source

https://dcc.icgc.org/releases/release_28