adaptive_burnin_filter {cuperdec} | R Documentation |
Calculate adaptive burn-in retain/discard list
Description
Automates a selection of a per-sample 'burn in' based on the nature of the sample's curve itself (rather than supplying a hard value) by finding the point from which the 'fluctuation' of the curve doesn't exceed the mean +- SD of the total curve.
Usage
adaptive_burnin_filter(curves, percent_threshold)
Arguments
curves |
A cuperdec curve table calculated with
|
percent_threshold |
A percentage of the target-source in a sample above which a sample is considered 'retained'. |
Value
A tibble with each row showing each sample and whether it passed the specified filter.
Examples
data(cuperdec_taxatable_ex)
data(cuperdec_database_ex)
taxa_table <- load_taxa_table(cuperdec_taxatable_ex)
iso_database <- load_database(cuperdec_database_ex, target = "oral")
curve_results <- calculate_curve(taxa_table, iso_database)
adaptive_burnin_filter(curve_results, percent_threshold = 0.1)
[Package cuperdec version 1.1.0 Index]