hard_burnin_filter {cuperdec}

Calculate hard burn-in retain/discard list

Description

Returns a table of whether each sample passes a given threshold, after considering a 'burn-in', in the form of a fraction of the abundance ranks.

Usage

hard_burnin_filter(curves, percent_threshold, rank_burnin)

Arguments

curves

A cuperdec curve table calculated with calculate_curve.

percent_threshold

A percentage of the target-source in a sample above which a sample is considered 'retained'.

rank_burnin

A number between 0 and 1 indicating the fraction of taxa to ignore before applying the threshold.

Value

A tibble with each row showing each sample and whether it passed the specified filter.

Examples

data(cuperdec_taxatable_ex)
data(cuperdec_database_ex)

taxa_table <- load_taxa_table(cuperdec_taxatable_ex)
iso_database <- load_database(cuperdec_database_ex, target = "oral")

curve_results <- calculate_curve(taxa_table, iso_database)
hard_burnin_filter(curve_results, percent_threshold = 50, rank_burnin = 0.1)