tag {colocPropTest}

Derive tag SNPs using heirarchical clustering

Description

Uses complete linkage and the hclust function to define clusters, then cuts the tree at 1-tag.threshold

Usage

tag(r2, r2_threshold = 0.95, quiet = FALSE, method = "complete")

Arguments

r2

matrix of rsquared values

r2_threshold

only 1 of a set of snps with r2 > r2_threshold will be kept

quiet

if FALSE (default), show progress messages

method

method used for heirarchical clustering. See hclust for options.

Value

character vector, names are snps, values are the tag for each SNP

Author(s)

Chris Wallace