x_ecam {coda4microbiome}

ecam_filtered

Description

Microbiome composition at genus level from Early childhood and the microbiome (ECAM) study (Bokulich et al. 2016). Metadata and microbiome data were downloaded from https://github.com/caporaso-lab/longitudinal-notebooks. Filtered data contains information on 42 children and 37 taxa.

Format

The dataset contains three objects:

x_ecam

microbiome abundance matrix in long format (873 rows) and 37 genera (columns)

taxanames

vector containing the taxonomy of the 37 taxa

metadata

matrix with information on the individuals at the observation time

References

Bokulich et al. (2016). Antibiotics, birth mode, and diet shape microbiome maturation during early life. Sci Transl Med 8:343