coda_glmnet_longitudinal0 {coda4microbiome}

coda_glmnet_longitudinal0

Description

internal function

Usage

coda_glmnet_longitudinal0(
  x,
  lrX,
  idlrX,
  nameslrX,
  y,
  x_time,
  subject_id,
  ini_time,
  end_time,
  covar = NULL,
  ktop = NULL,
  lambda = "lambda.1se",
  alpha = 0.9,
  nfolds = 10
)

Arguments

x

abundance matrix or data frame in long format (several rows per individual)

lrX

log-ratio matrix

idlrX

indices table in the log-ratio matrix

nameslrX

colnames of the log-ratio matrix

y

outcome (binary); data type: numeric, character or factor vector

x_time

observation times

subject_id

subject id

ini_time

initial time to be analyzed

end_time

end time to be analyzed

covar

data frame with covariates (default = NULL)

ktop

given number of selected taxa or compute the best number in case it is NULL (default = NULL)

lambda

penalization parameter (default = "lambda.1se")

alpha

elastic net parameter (default = 0.9)

nfolds

number of folds

Value

.

Author(s)

M. Calle - T. Susin