vncMedianCoverage.tsv {cellOrigins}

Drosophila melanogaster embryo ventral nerve cord RNASeq coverage

Description

Median RNAseq read coverages from 3 dissected embryonic (stage 11) fruit fly ventral nerve cords. The sequencing coverages are measured within the probing intervals of high-confidence BDGP insitu probes, as described in cellOrigins-package.

Format

The format is: probe name, coverage, chromosome, probe beginn, probe end, strand.

Source

Molnar, D 2015, 'Single embryo-single organ transcriptomics of Drosophila embryos', PhD thesis, University of Cambridge.

Examples

  fpath <- system.file("extdata", "vncMedianCoverage.tsv", package="cellOrigins")
vncExpression <- read.delim(file = fpath, header=FALSE, as.is=TRUE)