diagnosticPlots {cellOrigins} | R Documentation |
Diagnostic plots to explore seqVsInsitu results
Description
Accepts the result of seqVsInsitu
and iterating_seqVsInsitu
and produces diagnostic plots.
If the sequencing data fits to one or more terms or combinations of terms, then the scatterplot will cluster into foci.
As the number of combined terms is increased the foci merge into fewer groups. A diagonal in the scatterplot is a sign of error.
Usage
diagnosticPlots(seqVsInsitu_results)
Arguments
seqVsInsitu_results |
Value of |
Value
None.
Examples
fpath <- system.file("extdata", "vncMedianCoverage.tsv", package="cellOrigins")
vncExpression <- read.delim(file = fpath, header=FALSE, as.is=TRUE)
expression <- vncExpression$V2
names(expression) <- vncExpression$V1
result <- seqVsInsitu(expression, depth=1)
diagnosticPlots(result)
## Not run:
oracleResponse <- iterating_seqVsInsitu(expression, 3)
diagnosticPlots(oracleResponse)
## End(Not run)
[Package cellOrigins version 0.1.3 Index]