xml_bite {bite}

Write xml file with model

Description

Modifies a .xml file from beauti to include a model model in the Beast 2 analysis

Usage

xml_bite(model, xml, out = sprintf("%s_edited.xml", gsub(".xml", "",
  xml)))

Arguments

model

an object of class "model" (see details)

xml

name of the output file that will store the log of MCMC chain

out

where to write the edited xml

Details

This function takes a .xml file generated with Beauti and a model object generated with make_jive Only model objects that use models supported by the Beast implementation of model ("BM", c("BM", "sigma"), "WN", "OU", c("OU", "theta"), c("OU", "root"), c("OU", "root", "theta"))

Value

no return value, called for side effects

No return value: Modifies the .xml file given in xml in the user's filespace.

Author(s)

Theo Gaboriau