write_loom {anndata} | R Documentation |
Write .loom-formatted hdf5 file.
Description
Write .loom-formatted hdf5 file.
Usage
write_loom(anndata, filename, write_obsm_varm = FALSE)
Arguments
anndata |
An |
filename |
The filename. |
write_obsm_varm |
Whether or not to also write the varm and obsm. |
Examples
## Not run:
ad <- AnnData(
X = matrix(c(0, 1, 2, 3), nrow = 2, byrow = TRUE),
obs = data.frame(group = c("a", "b"), row.names = c("s1", "s2")),
var = data.frame(type = c(1L, 2L), row.names = c("var1", "var2")),
varm = list(
ones = matrix(rep(1L, 10), nrow = 2),
rand = matrix(rnorm(6), nrow = 2),
zeros = matrix(rep(0L, 10), nrow = 2)
),
uns = list(a = 1, b = 2, c = list(c.a = 3, c.b = 4))
)
write_loom(ad, "output.loom")
file.remove("output.loom")
## End(Not run)
[Package anndata version 0.7.5.6 Index]