ngchmVersion2-class {NGCHM}

Class representing ngchmVersion2 object

Description

Class representing ngchmVersion2 object

Slots

name

The name under which the NGCHM will be saved to the NGCHM server.

version

Integer version number (default: 2)

format

(default: "original")

uuid

character

baggage

optCharacter

inpDir

character

outDir

character

saveDir

(default: tempdir())

propFile

(default: "chm.properties")

layers

List of data layers

colormaps

Color map

rowMenu

optList

colMenu

optList

datasets

optList

dialogs

optList

tags

optCharacter

elementMenu

optList

rowTypeFunctions

optList

colTypeFunctions

optList

elementTypeFunctions

optList

axisTypes

optList

css

optList

extrafiles

optCharacter

extrascripts

optCharacter

properties

optList

overviews

optList

javascript

optList

rowOrder

A vector, dendrogram, or function specifying the CHM row order

rowDist

Distance method to use by default RowOrder. (default: "correlation", which is 1 minus the Pearson correlation among the rows.)

rowAgglom

Agglomeration method to use by default RowOrder. Choices are those from stats::hclust. (default: "ward.D2")

colOrder

A vector, dendrogram, or function specifying the CHM column order.

colDist

Distance method to use by default ColOrder. (default: "correlation", which is 1 minus the Pearson correlation among the cols.)

colAgglom

Agglomeration method to use by default ColOrder. Choices are those from stats::hclust. (default: "ward.D2")

rowOrderMethod

character (default: "User")

colOrderMethod

character (default: "User")

rowCutLocations

Explicit list of row cut locations. If specified, rowTreeCuts is set to NULL.

rowTreeCuts

Number of tree cuts for row. If specified, rowCutLocations is set to NULL.

rowCutWidth

Width of row cuts (default: 5 rows)

rowTopItems

optCharacter

rowDisplayLength

optInteger

rowDisplayAbbreviation

optCharacter

colCutLocations

Explicit list of col cut locations. If specified, colTreeCuts is set to NULL.

colTreeCuts

Number of tree cuts for col. If specified, colCutLocations is set to NULL.

colCutWidth

Width of col cuts (defautl: 5 columns)

colTopItems

optCharacter

colDisplayLength

optInteger

colDisplayAbbreviation

optCharacter

rowMeta

optList

colMeta

optList

rowCovariateBars

optList

colCovariateBars

optList

relatedLinks

optList

relatedGroups

optList

templates

optList

width

default: 500

height

default: 500