get.DegreeHubStatistic {MEGENA} | R Documentation |
calculate module degree statistics based on random triangulation model via T1 and T2 moves.
Description
calculation of module p-values.
Usage
get.DegreeHubStatistic(subnetwork,n.perm = 100,doPar = FALSE,n.core = 4)
Arguments
subnetwork |
a planar network as an igraph object. |
n.perm |
number of random networks generated, constraint with number of links and nodes same to "subnetwork". |
doPar |
TRUE/FALSE to parallelize. |
n.core |
number of cores/threads to use. |
Details
Hub significance calculation functionality. Make sure that, if doPar = TRUE, register cores using registerDoParallel() from doParallel package.
Value
a data.frame table showing node-wise statistics.
Author(s)
Won-Min Song
Examples
## Not run:
rm(list = ls())
data(Sample_Expression)
ijw <- calculate.correlation(datExpr[1:100,],doPerm = 2)
el <- calculate.PFN(ijw[,1:3])
g <- graph.data.frame(el,directed = FALSE)
out <- get.DegreeHubStatistic(subnetwork = g,n.perm = 100,doPar = FALSE,n.core = 4)
## End(Not run)
[Package MEGENA version 1.3.7 Index]