| Level2RegularNodeBP {GOxploreR} | R Documentation |
Regular nodes from a GO BP level
Description
The function retrieves the Regular nodes (RNs) from a GO-level. RNs are those GO-terms which have all their children term in the next GO-level (i.e level of parent + 1). If the optional parameter "organism" is missing then the result will be from the general GO tree instead of from a particular organism. The supported organisms are "Homo sapiens / Human", "Rattus norvegicus / Rat", "Mus musculus / Mouse", "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm" ,"Arabidopsis thaliana / Cress", "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast", "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli".
Usage
Level2RegularNodeBP(level, organism = NULL)
Arguments
level |
A numeric value for the GO-level |
organism |
Organism of interest that is supported by the package |
Value
Regular nodes from the GO-level
Examples
# Regular nodes on level 3
Level2RegularNodeBP(level = 3, organism = "Human" )
# Regular nodes on level 6
Level2RegularNodeBP(level = 6, organism = "Mus musculus" )