| Level2RegularNodeCC {GOxploreR} | R Documentation |
Regular nodes from a GO CC level
Description
The function retrieves the Regular nodes (RNs) from a GO-level. RNs are those GO-terms which have all their children in the next GO-level (i.e level = level of parent + 1). If the optional parameter "organism" is missing then the result will be from the general GO tree instead of from a particular organism. The supported organisms are "Homo sapiens / Human", "Rattus norvegicus / Rat", "Mus musculus / Mouse", "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm" ,"Arabidopsis thaliana / Cress", "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast", "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli".
Usage
Level2RegularNodeCC(level, organism = NULL)
Arguments
level |
A numeric value for the GO-level |
organism |
Organism of interest that is supported by the package |
Value
Regular nodes from the GO-level
Examples
# Regualar nodes on level 5
Level2RegularNodeCC(level = 5, organism = "Yeast")
# Regular nodes on level 9
Level2RegularNodeCC(level = 9, organism = "Rat")