make_tox_map {toxEval} | R Documentation |
Create an interactive map of the data
Description
The function make_tox_map
creates a leaflet
map
of the sites. This function places symbols at the location of each site in the data
file that represent the magnitude of EAR (color) and the number of
samples in the data set (size). This is the only function that requires
"dec_lon" and "dec_lat" (decimal longitude and decimal latitude) in the
data frame specified for the chem_site argument.
Usage
make_tox_map(
chemical_summary,
chem_site,
category = "Biological",
mean_logic = FALSE,
sum_logic = TRUE
)
map_tox_data(
chemical_summary,
chem_site,
category = "Biological",
mean_logic = FALSE,
sum_logic = TRUE
)
Arguments
chemical_summary |
Data frame from |
chem_site |
Data frame containing the columns SiteID, site_grouping, Short Name, dec_lon, and dec_lat. |
category |
Character. Either "Biological", "Chemical Class", or "Chemical". |
mean_logic |
Logical. |
sum_logic |
Logical. |
Details
The function map_tox_data
calculates the statistics for the map. It
my be useful on it's own.
Examples
# This is the example workflow:
path_to_tox <- system.file("extdata", package = "toxEval")
file_name <- "OWC_data_fromSup.xlsx"
full_path <- file.path(path_to_tox, file_name)
tox_list <- create_toxEval(full_path)
ACC <- get_ACC(tox_list$chem_info$CAS)
ACC <- remove_flags(ACC)
cleaned_ep <- clean_endPoint_info(end_point_info)
filtered_ep <- filter_groups(cleaned_ep)
chemical_summary <- get_chemical_summary(tox_list, ACC, filtered_ep)
make_tox_map(chemical_summary, tox_list$chem_site, "Biological")
make_tox_map(chemical_summary, tox_list$chem_site, "Chemical Class")
make_tox_map(chemical_summary, tox_list$chem_site, "Chemical")