get_count_txt {tinyarray}

get count from GEO

Description

get RNA-seq count file from GEO database

Usage

get_count_txt(gse, destdir = getwd(), download = FALSE)

Arguments

gse

gse assession number

destdir

The destination directory for data downloads.

download

download the txt file or not

Value

a list with deg data.frame, volcano plot and a list with DEGs.

Author(s)

Xiaojie Sun

See Also

geo_download

Examples

get_count_txt("GSE162550",destdir = tempdir())