geo_download {tinyarray} | R Documentation |
geo_download
Description
download gse data and get informations
Usage
geo_download(
gse,
by_annopbrobe = TRUE,
simpd = TRUE,
colon_remove = FALSE,
destdir = getwd(),
n = 1
)
Arguments
gse |
gse assession number |
by_annopbrobe |
download data by geoquery or annoprobe |
simpd |
get simplified pdata,drop out columns with all same values |
colon_remove |
whether to remove duplicated columns with colons |
destdir |
The destination directory for data downloads. |
n |
For data with more than one ExpressionSet, specify which one to analyze |
Value
a list with exp,pd and gpl
Author(s)
Xiaojie Sun
See Also
Examples
## Not run:
if(requireNamespace("Biobase",quietly = TRUE)&
requireNamespace("AnnoProbe",quietly = TRUE)){
gse = "GSE42872"
a = geo_download(gse,destdir=tempdir())
}else{
if(!requireNamespace("AnnoProbe",quietly = TRUE)) {
print("Package 'AnnoProbe' needed for this function to work.
Please install it by install.packages('AnnoProbe')"print)
}
if(!requireNamespace("Biobase",quietly = TRUE)) {
print("Package 'Biobase' needed for this function to work.
Please install it by BiocManager::install('Biobase')"print)
}
}
## End(Not run)
[Package tinyarray version 2.4.2 Index]