| PhenovatorDat1 {statgenHTP} | R Documentation |
Growth chamber data for an Arabidopsis experiment in the Phenovator platform.
Description
A dataset containing data from a growth chamber experiment with Arabidopsis in the Phenovator platform (WUR, Netherlands, Flood et al. 2016). It consists of one experiment with 1,440 plants grown in a growth chamber. The number of tested genotypes is 192 with 6 to 7 replicates per genotype. Four reference genotypes were also tested with 15 or 30 replicates. The studied trait is the photosystem II efficiency (EffpsII) extracted from the pictures over time (van Rooijen et al. 2017). This dataset was kindly provided by René Boesten and Mark Aarts.
Usage
PhenovatorDat1
Format
A data.frame with 103,839 rows and 10 columns:
- Genotype
Genotypes
- Basin
Table of experiment
- Replicate
Block define after sowing for post-blocking. They are not full-resolvable blocks.
- Image_pos
Position of the camera
- x
Row coordinate
- y
Column coordinate
- Sowing_Position
Unique pot ID
- timepoints
time of picture
- EffpsII
Efficiency of the photosystem II
- pos
Unique pot ID using rowcol coordinates
References
Rooijen, Roxanne van, Willem Kruijer, René Boesten, Fred A. van Eeuwijk, Jeremy Harbinson, and Mark G. M. Aarts. 2017. “Natural Variation of YELLOW SEEDLING1 Affects Photosynthetic Acclimation of Arabidopsis Thaliana.” Nature Communications 8 (1). doi:10.1038/s41467-017-01576-3
Flood, Pádraic J., Willem Kruijer, Sabine K. Schnabel, Rob van der Schoor, Henk Jalink, Jan F. H. Snel, Jeremy Harbinson, and Mark G. M. Aarts. 2016. “Phenomics for Photosynthesis, Growth and Reflectance in Arabidopsis Thaliana Reveals Circadian and Long-Term Fluctuations in Heritability.” Plant Methods 12 (1): 14. doi:10.1186/s13007-016-0113-y