find_results {rPDBapi}

Retrieve Specific Fields for Search Results from RCSB PDB

Description

This function performs a search in the Protein Data Bank (PDB) using a provided search term and retrieves information for a specified field (e.g., citation) for each search result. It relies on 'query_search' and 'get_info' functions for searching and retrieving detailed information.

Usage

find_results(search_term, field = "citation")

Arguments

search_term

A string specifying the term to search for in the PDB.

field

A string indicating the specific field to retrieve for each search result. Default is "citation". Other options are 'audit_author', 'cell', 'diffrn', 'diffrn_detector', 'diffrn_radiation', 'diffrn_source', 'entry', 'exptl', 'exptl_crystal', 'exptl_crystal_grow', 'pdbx_sgproject', 'pdbx_audit_revision_details', 'pdbx_audit_revision_history', 'pdbx_database_related', 'pdbx_database_status', 'rcsb_accession_info', 'rcsb_entry_container_identifiers', 'rcsb_entry_info', 'rcsb_primary_citation', 'refine', 'refine_hist', 'refine_ls_restr', 'reflns', 'reflns_shell', 'software', 'struct', 'struct_keywords', 'symmetry', 'rcsb_id'

Value

A named list where each element's name is a PDB ID and its value is the information for the specified field from the corresponding search result.

Examples

find_results("crispr", field = "citation")