likelihood_EDM_piecewise {pttstability}

calculate likelihood for piecewise data

Description

Calculates likelihoods across several segments of data - e.g. multiple plots from a single experiment. See documentation for particleFilterLL_piecewise for examples of use.

Usage

likelihood_EDM_piecewise(
  param,
  y,
  libuse_y,
  smap_coefs,
  Euse,
  tuse,
  N,
  colpar = c(logit(1e-06), log(0.1))
)

Arguments

param

parameters to be passed to likelihood0 function

y

the time series to be analyzed

libuse_y

a matrix with two columns, specifying the start end end positions of segments within vector y

smap_coefs

a matrix of s-mapping coefficients

Euse

embedding dimension for the s-mapping analysis

tuse

theta for s-mapping analysis

N

number of particles

colpar

parameters to be passed to the colfun0 - defaults to c(logit(1e-6), log(0.1))

Value

summed log likelihood across all segments