plot_series {popbayes}

Plot original vs converted counts

Description

This function plots a panel of two graphics for one count series (previously generated by format_data()):

• on the left side, scatter plot overlapping original (black points) and converted counts (grey points);

• on the right side, scatter plot of converted counts with boundaries of the 95% confident interval.

Usage

plot_series(series, title = TRUE, path = ".", path_fig = ".", save = FALSE)

Arguments

series

a character string. The count series names (can be retrieved by running list_series()).

title

a logical. If TRUE (default) a title (series name) is added.

path

a character string. The directory in which count series have been saved by the function format_data().

path_fig

a character string. The directory where to save the plot (if save = TRUE). This directory must exist and can be an absolute or a relative path.

save

a logical. If TRUE (default is FALSE) the plot is saved in path_fig.

Value

No return value.

Examples

## Load Garamba raw dataset ----
file_path <- system.file("extdata", "garamba_survey.csv", 
                         package = "popbayes")
                         
garamba <- read.csv(file = file_path)

## Create temporary folder ----
temp_path <- tempdir()

## Format dataset ----
garamba_formatted <- popbayes::format_data(
  data              = garamba, 
  path              = temp_path,
  field_method      = "field_method",
  pref_field_method = "pref_field_method",
  conversion_A2G    = "conversion_A2G",
  rmax              = "rmax")

## Get series names ----
popbayes::list_series(path = temp_path)

## Plot for Alcelaphus buselaphus at Garamba ----
popbayes::plot_series("garamba__alcelaphus_buselaphus", path = temp_path)