filter_series {popbayes} | R Documentation |
Extract the count series corresponding to a location and/or a species
Description
This function identifies the count series relative to a species and/or
a location in a named list like the output of function format_data()
. If
both species and location are provided, the series of counts of the species
at the specified location is extracted. Otherwise, all series corresponding
to the specified criterion (species or location) are extracted.
Usage
filter_series(data, species = NULL, location = NULL)
Arguments
data |
a named |
species |
a |
location |
a |
Value
A subset of data
, i.e. a named list
.
Examples
## Load Garamba raw dataset ----
file_path <- system.file("extdata", "garamba_survey.csv",
package = "popbayes")
garamba <- read.csv(file = file_path)
## Create temporary folder ----
temp_path <- tempdir()
## Format dataset ----
garamba_formatted <- popbayes::format_data(
data = garamba,
path = temp_path,
field_method = "field_method",
pref_field_method = "pref_field_method",
conversion_A2G = "conversion_A2G",
rmax = "rmax")
## Number of count series ----
length(garamba_formatted)
## Retrieve count series names ----
popbayes::list_series(path = temp_path)
## Get data for Alcelaphus buselaphus (at all sites) ----
x <- popbayes::filter_series(garamba_formatted,
species = "Alcelaphus buselaphus")
## Get data at Garamba (for all species) ----
x <- popbayes::filter_series(garamba_formatted,
location = "Garamba")
## Get data for Alcelaphus buselaphus at Garamba only ----
x <- popbayes::filter_series(garamba_formatted,
location = "Garamba",
species = "Alcelaphus buselaphus")
[Package popbayes version 1.2.0 Index]