| simAutoCross {polySegratio} | R Documentation |
S3 class simAutoCross
Description
An S3 class which contains simulated dominant marker data for autopolyploids and other data of interest such as segregation proportions as well as parameters set for the generating given parents with ‘01’, ‘10’ and ‘11’ markers
Value
markers |
matrix of 0,1 dominant markers with individuals as cols and rows as markers |
true.dosage |
true doses for each marker |
name.true.dose |
names of true doses for each marker |
p10 |
object of class |
p01 |
object of class |
p11 |
object of class |
ploidy.level |
the number of homologous chromosomes as numeric (single value) |
prop.par.type |
proportion of markers for each parental type ‘p01’, ‘p10’ and ‘p11’ |
n.markers |
number of markers (Default: 500) |
n.individuals |
number of individuals in the cross (Default: 200) |
dose.proportion |
proportion in each dose – if numeric vector is the same for ‘p01’, ‘p10’ and ‘p11’ else a list with components sQuotep01, ‘p10’ and ‘p11’ |
no.dosage.classes |
number in each dosage class |
no.parType |
number in each parental type |
time.generated |
time/date when data set generated |
seed |
seed for random number generator seed which could be used to reproduce results (I hope) |
call |
matches arguments when function called |
Author(s)
Peter Baker p.baker1@uq.edu.au
See Also
sim.autoCross,simAutoMarkers,
sim.autoMarkers